What's New on PhysioNet?

WFDB Software Package

Over 70 open-source applications for signal processing, analysis, and more, all built on a stable and easy-to-use library that can be incorporated into your own software. Latest update: Saturday, 9 March 2019 (summary here).

19 February 2019 12:00:00 AM EST New Database Added: NIFEADB

The Non-Invasive Fetal ECG Arrhythmia Database (NIFEA DB) provides a series of fetal arrhythmias recordings (n=12) and a number of control normal rhythm recordings (n=14) performed using the non-invasive fetal electrocardiography (NI-FECG) technique.

8 February 2019 12:00:00 AM EST PhysioNet/CinC Challenge 2019

The PhysioNet/Computing in Cardiology Challenge 2019 has now begun! This year's topic is prediction of sepsis from clinical data. We are delighted to announce that this year's Challenge is being sponsored by the Gordon and Betty Moore Foundation, Google and Mathworks.

2 February 2019 12:00:00 AM EST New Software and Tutorial: Generalized Multiscale Entropy (GMSE)

GMSE is a new computational tool for quantifying the volatility of time series. This work extends the multiscale entropy (MSE) algorithm currently available on PhysioNet. The GMSE method was first described in Costa M., Goldberger A.L. Generalized Multiscale Entropy Analysis: Application to Quantifying the Complex Volatility of Human Heartbeat Time Series. Entropy 2015;17:1197-1203.

29 January 2019 12:00:00 AM EST New Database Added: MIMIC CXR

MIMIC-CXR is a large, publicly-available database comprising of de-identified chest radiographs. The dataset contains 371,920 chest x-rays associated with 227,943 imaging studies. This database is described in Johnson AEW, Pollard TJ, Berkowitz S, Greenbaum NR, Lungren MP, Deng C-Y, Mark RG, Horng S. MIMIC-CXR: A large publicly available database of labeled chest radiographs. arXiv (2019).

17 December 2018 12:00:00 AM EST New Database Added: EEGMAT

The database contains EEG recordings of subjects before and during the performance of mental arithmetic tasks.

13 December 2018 12:00:00 AM EST New Database Added: ECGCIPA

ECG effects of ranolazine, verapamil, lopinavir+ritonavir, chloroquine, dofetilide, diltiazem, and dofetilide+diltiazem in a small sample size clinical study. The ECGCIPA database contains multi-channel ECG recordings of 60 subjects participating in the CiPA ECG validation study.

28 November 2018 12:00:00 AM EST Physiological Measurement Focus Issue

The Journal of Physiological Measurement is now accepting submissions in the focus issue: Automated Analysis of Arousals, Sleep and Sleep-Related Disorders Using Physiological Time Series. Please included updated results from the test dataset if you develop a new algorithm. Note that the scope does not confine you to the data and topic of this year's Challenge. The deadline is set for the end of February 2019.

16 November 2018 12:00:00 AM EST New Toolkit Added: dSQI

The advent of telehealth applications and remote patient monitoring has led to an increasing need for continuous signal quality monitoring to ensure high diagnostic accuracy of the recordings. Cardiovascular diseases often manifest electrophysiological anomalies, therefore the electrocardiogram (ECG) is one of the most used signals for diagnostic applications. Various types of noise and artifacts are not uncommon in ECG recordings and assessing the quality of the signal is essential prior to any clinical interpretation. In this study, a dynamic signal quality index (dSQI) is introduced using a new time-frequency template-based approach.

14 November 2018 12:00:00 AM EST New Database Added: RVMH1

Functional metrics of autonomic control of heart rate, including baroreflex sensitivity, have been shown to be strongly associated with cardiovascular risk. A decrease in baroreflex sensitivity with aging is hypothesized to represent a contributing causal factor in the etiology of primary hypertension. To assess baroreflex function in human subjects, two complementary methods to simulate the response in heart rate elicited by the Valsalva maneuver were developed and applied to data obtained from a cohort of healthy normal volunteers.

04 October 2018 12:00:00 AM EST New Database Added: CVES

This database contains multimodal data from a large study investigating the effects of ischemic stroke on cerebral vasoregulation. The cross sectional study compared 60 subjects who suffered strokes, to 60 control subjects, collecting the following data for each patient across multiple days: transcranial doppler of cerebral arteries, 24-h blood pressure numerics, high resolution waveforms (ECG, blood pressure, CO2 and respiration) during various movement tasks, 24-h ECG, EMG, and accelerometer recordings, and gait pressure recordings during a walking test.

30 August 2018 12:00:00 AM EST New Database Added: CULM

The Complex Upper-Limb Movements database contains hand trajectory data from ten subjects undergoing writing tasks, used to model motor primitives.

29 August 2018 12:00:00 AM EST New Database Added: TPEHGT

The Term-Preterm ElectroHysteroGram DataSet with Tocogram (TPEHGT DS) contains 26 four-signal 30-min uterine EHG records, i.e., three EHG signals accompanied by a simultaneously recorded external tocogram measuring mechanical uterine activity (TOCO signal) of pregnant women, and another five 30-min uterine records (EHG signals and TOCO signal) of non-pregnant women.

17 July 2018 12:00:00 AM EST Database Expanded: sleep-edfx

The sleep-edf database has been expanded to contain 197 whole-night PolySomnoGraphic sleep recordings, containing EEG, EOG, chin EMG, and event markers. Some records also contain respiration and body temperature.

20 June 2018 12:00:00 AM EST New Database Added: BIDMC

This dataset contains signals and numerics extracted from the much larger MIMIC II matched waveform Database, along with manual breath annotations made from two annotators, using the impedance respiratory signal.

07 June 2018 12:00:00 AM EST New Database Added: VOICED

This database includes 208 voice samples, from 150 pathological, and 58 healthy voices.

15 May 2018 12:00:00 AM EST New Software: PCST

The PhysioNet Cardiovascular Signal Toolbox is an open-source modular program for calculating heart rate variability (HRV) implemented in Matlab with evidence-based algorithms and output formats. The Toolbox is compatible with 64-bit MATLAB on GNU/Linux, Mac OS X, and MS-Windows.

02 May 2018 12:00:00 AM EST New Software: GEH

These software scripts calculate Global Electrical Heterogeneity scores of ecg signals, which characterize the degree of heterogeneity of the total recovery time across the ventricles.

21 February 2018 12:00:00 AM EST PhysioNet/CinC Challenge 2018

The 2018 PhysioNet/Computing in Cardiology Challenge is now open. This year's Challenge, "You Snooze, You Win", is focused on the problem of automatically detecting disturbances in a patient's sleep. Given a collection of physiological signals recorded during sleep, including EEG, ECG, and EMG, participants are invited to develop an algorithm to automatically identify arousal events, and will be scored based on how well their algorithm's results agree with those of expert human annotators. More information can be found at https://physionet.org/challenge/2018/.

07 February 2018 12:00:00 AM EST New Database Added: SLEEPBRL

The database contains 32 records of non-contact sleep monitoring by a bioradar. The records are accompanied by results of sleep scoring, based on polysomnography according to the rules of the American Academy of Sleep Medicine.

2 February 2018 12:00:00 AM EST Challenge Papers Available

All the papers from the Challenge along with their corresponding PDFs are now available. The links to the final source code representing their score will be posted soon.

24 January 2018 12:00:00 AM EST New Database Added: CUILESS16

The Concept Unique Identifier (CUI)-less database contains a corpus of "CUI-less" concepts taken from the SemEval2015 Task 14 that have been assigned CUIs. The annotation process allows assignment of CUIS from any Unified Medical Language System (UMLS) semantic group and compositional normalization using more than one CUI per disease entity. Concepts are mapped to SNOMED CT as represented in the September 2016 version found in Unified Medical Language System (UMLS) 2016AB.

09 January 2018 12:00:00 AM EST New Database Added: PWAVE

This database contains reference p-wave annotations for twelve signals from the MIT-BIH arrhythmia database.

13 December 2017 12:00:00 AM EST New Research Approach

Drs. Madalena Costa and Ary Goldberger, members of the PhysioNet team, have recently published an article about heart rate fragmentation in Science Trends. Heart rate fragmentation is a new approach to conceptualizing and measuring heart rate dynamics. The Science Trends article provides links to two studies recently published in the journal Frontiers in Physiology, Heart Rate Fragmentation: A New Approach to the Analysis of Cardiac Interbeat Interval Dynamics and Heart Rate Fragmentation: A Symbolic Dynamical Approach.

20 October 2017 12:00:00 AM EST New Database Added: TAPPY

The dataset contains keystroke logs collected from over 200 subjects, with and without Parkinson's Disease (PD), as they typed normally on their own computer (without any supervision) over a period of weeks or months (having initially installed a custom keystroke recording app, Tappy). This dataset has been collected and analyzed in order to indicate that the routine interaction with computer keyboards can be used to detect changes in the characteristics of finger movement in the early stages of PD.

20 October 2017 12:00:00 AM EST New Database Added: WRIST

This database contains wrist PPGs recorded during walking, running and bike riding. Simultaneous motion estimates are collected using both accelerometers and gyroscopes to give multiple options for the removal of motion interference from the PPG traces. A reference chest ECG is included to allow a gold-standard comparison of heart rate during exercise.

28 September 2017

The Pressure Map Dataset for In-bed Posture Classification database contains in-bed posture pressure data from multiple adult participants using two different types of pressure sensing mats. The dataset and its collection methods are described in A pressure map dataset for posture and subject analytics.

27 September 2017

The Pattern Analysis of Oxygen Saturation Variability database contains one hour oxygen saturation measurements of 36 patients, used for the analysis of oxygen saturation variability. The dataset and its collection methods are described in Pattern Analysis of Oxygen Saturation Variability in Healthy Individuals: Entropy of Pulse Oximetry Signals Carries Information about Mean Oxygen Saturation.

26 September 2017

The Evoked Auditory Responses in Hearing Impaired database contains evoked Auditory Brainstem Response (ABR) and Otoacoustic Emission (OAE) recordings in eight hearing impaired listeners, in response to tone-burst stimuli across a wide range of levels. The dataset and its collection methods are described in Objective estimation of loudness growth in hearing-impaired listeners.

10 August 2017

The quantitative dehydration estimate database contains bioimpedance measurements, temperature measurements, salivary samples, and sweat samples, used in quantitative estimation of dehydration (total body water loss)..

9 August 2017

The MIMIC-III Waveform Database has been released, containing our largest collection to date of physiologic signals collected by bedside patient monitors in adult and neonatal intensive care units. Over 44,000 recordings have been added to the existing MIMIC-II Waveform Database, for a total of over 67,000 recordings and over three million hours of waveform data. For about one third of the database (about 22,000 recordings from 10,000 patients), extensive clinical information is also available to qualified researchers via the MIMIC-III Clinical Database.

19 July 2017

The database contains non-EEG physiological signals collected at Quality of Life Laboratory at University of Texas at Dallas, used to infer the neurological status of 20 healthy subjects. The data collected consists of electrodermal activity, temperature, acceleration, heart rate, and arterial oxygen level. A description of the dataset and its collection methods are described in A Non-EEG Biosignals Dataset for Assessment and Visualization of Neurological Status.

19 July 2017

The University of Cagliari electroTastegram database contains 39 differential biopotential measurements recorded from the tongues of as many healthy voluntary human subjects (16 males, 23 females, equally divided into the three PROP taster status classes), during a stimulation with 30uL, 3.2 mmol/L solution of 6-n-propylthiouracil (PROP). A description of the dataset and its collection methods are described in First objective evaluation of taste sensitivity to 6-n-propylthiouracil (PROP), a paradigm gustatory stimulus in humans.

19 July 2017

The Shiraz University fetal heart sounds database contains fetal and maternal PCG recordings from 109 pregnant women. A description of the dataset and its collection methods are described in An open access database for the evaluation of heart sound algorithms.

12 July 2017

The Video Pulse Signals in Stationary and Motion Conditions dataset contains 40 pulse signal recordings obtained from 15 healthy volunteers (12 men and 3 women between 23 and 35 years). For each subject, there is a simultaneous face video recording, and a finger pulse recording reference system, in a sitting position. The video pulse signals were obtained from videos recorded by two camera models at 15 and 60 frames per second, which were then further processed. The reference finger pulse sensor had a sampling frequency of 1 kHz..

23 May 2017

Members of the PhysioNet team have recently described fragmentation analysis, a new conceptual and methodologic approach to short-term heart rate variability. See Frontiers in Physiology for full text.

19 May 2017

The EEG Signals from an RSVP Task database contains EEG data from 11 healthy participants upon rapid presentation of images through the Rapid Serial Visual Presentation (RSVP) protocol at speeds of 5, 6, and 10 Hz. A description of the dataset and its collection methods are described in Towards the automated localisation of targets in rapid image-sifting by collaborative brain-computer interfaces

11 May 2017

The Tai Chi, Physiological Complexity, and Healthy Aging-Gait database contains two-channel gait recordings of 87 older adults from the Greater Boston area. Subjects were from a hybrid study design that included a two-arm randomized clinical trial (RCT) along with an additional observational comparison group. A description of the dataset and its collection methods are described in A Systems Biology Approach to Studying Tai Chi, Physiological Complexity and Healthy Aging: Design and Rationale of a Pragmatic Randomized Controlled Trial.

14 February 2017

The National Sleep Research Resource (NSRR) has expanded its research databases and tools, as well as launching a series of tutorials on their use. The NSRR is supported by the National Heart, Lung, and Blood Institute (NHLBI) of the NIH.

09 February 2017

The Preterm Infant Cardio-respiratory Signals (PICS) database contains simultaneous ECG and respiration recordings of ten preterm infants collected from the Neonatal Intensive Care Unit (NICU) of the University of Massachusetts Memorial Healthcare. A description of the dataset and its collection methods are described in Predicting Bradycardia in Preterm Infants Using Point Process Analysis of Heart Rate.

1 February 2017

We are excited to announce the opening of the annual PhysioNet/Computing in Cardiology Challenge for 2017: AF Classification from a short single lead ECG recording. A database of over 10,000 ECG recordings is being made freely available exclusively for this competition by AliveCor, and represent a serendipitous sample of patient-initiated recordings of one minute or less. They have all been labeled for rhythm by hand into one of four categories: Normal, Atrial Fibrillation, Other Rhythm or Too Noisy to Process. We challenge the public to develop the most accurate classifier of these data into these four categories. As usual, a portion of these data have been hidden from the public to allow us to objectively assess your algorithms. More information on the Challenge, including data and example code can be found at http://physionet.org/challenge/2017/.

31 January 2017

The STAFF-III database was acquired during 1995-96 at Charleston Area Medical Center (WV, USA) where single prolonged balloon inflation had been introduced to achieve optimal results of percutaneous transluminal coronary angiography (PTCA) procedures, replacing the typical series of brief inflations. The database consists of standard 12-lead ECG recordings from 104 patients. A description of the dataset and its collection methods are described in Spatial, individual and temporal variation of the high frequency QRS amplitudes in the 12 standard electrocardiographic leads.

19 January 2017

The CHARIS database contains multi-channel recordings of ECG, arterial blood pressure (ABP), and intracranial pressure (ICP) of patients diagnosed with traumatic brain injury (TBI). The data is contributed by members of the CHARIS project which aims to systematize the analysis of relevant physiological signals, and create data-driven algorithms to search for potential predictors of acute clinical events for patients with acute brain injury. A description of the dataset and its collection methods are described in Trending autoregulatory indices during treatment for traumatic brain injury.

20 December 2016

The neuroQWERTY MIT-CSXPD database contains keystroke logs collected from 85 subjects with and without parkinsons disease (PD). This dataset has been collected and analyzed in order to indicate that the routine interaction with computer keyboards can be used to detect motor signs in the early stages of PD. A description of the dataset and its collection methods are described in Computer keyboard interaction as an indicator of early Parkinson's disease.

16 December 2016

The Cerebral Haemodynamic Autoregulatory Information System (CHARIS) GUI toolkit contains a Matlab GUI used to display and process intracranial pressure features and relationships with other physiological signals. A description of the algorithms can be found in Trending autoregulatory indices during treatment for traumatic brain injury.

15 September 2016

The ECG effects of Dofetilide, Moxifloxacin, Dofetilide+Mexiletine, Dofetilide+Lidocaine and Moxifloxacin+Diltiazem in Healthy Subjects database contains data from a randomized, double-blind, 5-period crossover clinical trial in healthy male and female subjects, 18 to 35 years of age, to compare the electrophysiological response of hERG potassium channel blocking drugs with and without the addition of late sodium or calcium channel blocking drugs. The dataset and its collection methods are described in Late sodium current block for drug-induced long QT syndrome: Results from a prospective clinical trial.

3 September 2016

The MAMEM steady state visually evoked potentials database has been updated with a third experimental dataset.

26 July 2016

The ECG Effects of Ranolazine, Dofetilide, Verapamil, and Quinidine in Healthy Subjects database contains multi-channel ECG recordings of subjects partaking in a randomized, double-blind, 5-period crossover clinical trial aimed at comparing the effects of four known QT prolonging drugs versus placebo on electrophysiological and other clinical parameters. The dataset and its collection methods are described in Differentiating Drug-Induced Multichannel Block on the Electrocardiogram: Randomized Study of Dofetilide, Quinidine, Ranolazine, and Verapamil.

20 June 2016

The Long Term Movement Monitoring database contains 3-day 3D accelerometer recordings of 71 elder community residents, used to study gait, stability, and fall risk. The dataset and its collection methods are described in Does the Evaluation of Gait Quality During Daily Life Provide Insight Into Fall Risk? : A Novel Approach Using 3-Day Accelerometer Recordings.

9 June 2016

The Indwelling Arterial Catheter Clinical dataset, contains clinical data for 1776 patients from the MIMIC-II clinical database. It was the basis for the article: Hsu DJ, et al. The association between indwelling arterial catheters and mortality in hemodynamically stable patients with respiratory failure: A propensity score analysis. Chest, 148(6):1470–1476, Aug. 2015. This dataset was also used by Raffa et al. in Chapter 5 "Data Analysis" of the forthcoming book: Secondary Analysis of Electronic Health Records, published by Springer in 2016.

8 June 2016

The MAMEM steady state visually evoked potentials database containing 256 channel EEG recordings of 11 subjects under the stimulation of flickering lights has been expanded with a second experimental dataset.

19 May 2016

The Human Balance Evaluation database contains force platform recordings from 193 subjects undergoing stabilography tests. This dataset is contributed by the BMC-Lab of the Federal University of ABC.

29 April 2016

The fetal ECG synthetic database is a large database of simulated adult and non-invasive fetal ECG (NI-FECG) signals, which provides a robust resource that enables reproducible research in the field. The data is generated using the FECGSYN simulator (visit website). The dataset and its collection methods are described in An Open-Source Framework for Stress-Testing Non-Invasive Foetal ECG Extraction Algorithms.

19 April 2016

The Association for the Advancement of Medical Instrumentation (AAMI) announced that the Foundation’s highest honor, the Laufman-Greatbatch Award for 2016, was being awarded for the creation and development of the PhysioNet Resource.

15 April 2016

The Squid Giant Axon Membrane Potential database contains single-unit neuronal recordings of squid giant axons in response to stimulus currents. The membrane potential and stimulus current are given for a total of 170 trials across 8 different axons. The dataset and its collection methods are described in Noisy Inputs and the Induction of On-Off Switching Behavior in a Neuronal Pacemaker.

15 April 2016

The MAMEM steady state visually evoked potentials database contains 256 channel EEG recordings of 11 subjects under the stimulation of flickering lights. The dataset and its collection methods are described in Comparative evaluation of state-of-the-art algorithms for SSVEP-based BCIs.

12 April 2016

The Multiscale Poincare Plots package contains MATLAB scripts used to visualize time series by plotting Poincare plots of the original signal course grained at multiple time scales. A detailed description of the algorithm can be found in Multiscale Poincare plots for visualizing the structure of heartbeat time series.

10 April 2016

The Logistic Regression HSMM based Heart Sound Segmentation package contains MATLAB code used to segment phonocardiogram (PCG) recordings, and detect the four states of the heart cycle. This state of the art segmentation code by Springer is used in the sample entry of the 2016 PhysioNet/CinC Challenge. A detailed description of this segmentation algorithm can be found in Logistic Regression-HSMM-based Heart Sound Segmentation.

31 March 2016

The Steady State Visually Evoked Potentials Database contains 16 channel EEG recordings of five subjects exposed to flashing LEDs at different frequencies. This dataset is used and described in A New Method of Spatial Filters Design for Brain-Computer Interface Based on Steady State Visually Evoked Potentials.

09 March 2016

The newly contributed software for Modeling of Heart Rate Variability Including the Effect of Sleep Stages implements a model for simulating healthy nighttime heart rate variability based on the properties of sleep observed in real data. Also included are 20 RR time series generated by the model. The model was first proposed in “Modeling heart rate variability including the effect of sleep stages,” by Soliński et al in CHAOS 26, 023101 (2016).

04 March 2016

We are pleased to announce the 2016 PhysioNet/Computing in Cardiology Challenge: Classification of Normal/Abnormal Heart Sound Recordings. For this year's Challenge, we have released a collection of 3,125 phonocardiograms from a variety of clinical and non-clinical sources. We invite participants to develop algorithms to determine, based on a short heart sound recording, whether the patient should be referred on for an expert diagnosis.

04 March 2016

The Transfer Entropy With Partitioning package is a repository of MATLAB functions that can estimate transfer entropy (information flow) from one time series to another using a non-parametric partitioning algorithm. Also included is an example data set that the implemented algorithms can be applied to. These algorithms are used and described in Transfer Entropy Estimation and Directional Coupling Change Detection in Biomedical Time Series.

04 March 2016

The MMG Database contains uterine magnetomyographic (MMG) signals recorded using the 151 channel SARA (SQUID Array for Reproductive Assessment) system installed at UAMS, Little Rock, USA. The dataset and its collection methods are described in Characterizing the Propagation of Uterine Electrophysiological Signals Recorded with a Multi-Sensor Abdominal Array in Term Pregnancies

18 February 2016

The Physiologic Response to Changes in Posture Database contains a collection of physiological recordings (ECG and ABP) from ten healthy subjects in response to a slow tilt, a fast tilt, and a standing-up maneuver. The dataset and its collection methods are described in Circulatory Response to Passive and Active Changes in Posture

18 December 2015

The Motion Artifact Contaminated ECG Database contains short duration ECG signals recorded from a single healthy 25-year-old male performing different physical activities to study the effect of motion artifacts on ECG signals and their sparsity. The dataset and its collection method are described in Rate-Adaptive Compressed-Sensing and Sparsity Variance of Biomedical Signals

25 November 2015

The kl-single-uncentralized subdirectory contains another new set of single lead KL basis functions for the ST segments, and their subsequent normalized and non-normalized KL coefficients. The set of clean heart beats from which the ST segments are extracted slightly differ from those of the previously derived 2011 KL dataset. More importantly, this time the KL coefficients are not centralized by their mean values.

9 November 2015

Data Chromatix is a technique for visualizing trends in biomedical signals by bringing memory of the system's past behavior into the current display window. This package was developed at the Wyss Institute at Harvard by A. Burykin, S. Mariani, T. Silva and T. Henriques, and is described in "Remembrance of time series past: simple chromatic method for visualizing trends in biomedical signals," Burykin A, Mariani S, Henriques T, Silva TF, Schnettler WT, Costa MD, Goldberger AL. Physiol Meas 2015;36(7):N95.

9 November 2015

ECG-kit This toolbox is a collection of MATLAB tools that Mariano Llamedo Soria used, adapted or developed during his PhD and post-doc work with the Besicos group at University of Zaragoza, Spain and at the National Technological University of Buenos Aires, Argentina. The main feature of this toolbox is that it allows the use of several popular algorithms for ECG processing, including: Algorithms from Physionet's WFDB software package; QRS detectors, such as gqrs, wqrs, wavedet, ecgpuwave, Pan & Tompkins, EP limited; Wavelet-based ECG delineator; Pulse wave detectors as wabp and wavePPG; and a2hbc and EP limited heartbeat classifiers.

19 May 2015

Smart Health for Assessing the Risk of Events via ECG (SHAREE database). The SHAREE database was developed in order to investigate the possibility of identifying hypertensive subjects at higher risk to develop vascular events based on Heart Rate Variability analysis. The database was created by Paolo Melillo, Raffaele Izzo, Ada Orrico, Paolo Scala, Marcella Attanasio, Marco Mirra, Nicola De Luca, and Leandro Pecchia as part of the “Smart Health and Artificial intelligence for Risk Estimation” (SHARE) project, which seeks ways to prevent cardiovascular events and falls in people over 65.

9 May 2015

Icelandic 16-electrode Electrohysterogram DataBase (EHGDB). A new dataset of 122 16-electrode EHG recordings performed on 45 pregnant Icelandic women has been published in PhysioBank. The data was contributed by Ásgeir Alexandersson, who performed the recordings at Akureyri Primary Health Care Centre, Akureyri Hospital and Landspitali University Hospital. A detailed description of the database has been published in Nature's new journal Scientific Data 2, Article number: 150017 (2015).

14 February 2015

The PhysioNet/Computing in Cardiology Challenge 2015 is now open. This year's challenge is 'Reducing False Arrhythmia Alarms in the ICU'. False alarms in the ICU can lead to a disruption of care, impacting both the patient and the clinical staff through noise disturbances, desensitization to warnings and slowing of response times, leading to decreased quality of care. To address this issue, competitors are challenged to devise a method of processing all the available data to reduce false alarms with minimal or no effect on true (vital) alarms.

31 January 2015

Two new software packages have been added to PhysioToolkit! The first package, D3Maps, is a tool for visualizing the behavior of complex systems by means of the dynamical density delay mapping technique. This package was developed at the Wyss Institute by A. Burykin, L. Citi, M.D. Costa and A.L. Goldberger. The second software package, Multiscale Multifractal Analysis, is a time series analysis method designed to describe scaling properties of fluctuations within a signal. The software package was contributed by Jan Gierałtowski from Warsaw University of Technology.

22 January 2015

PhysioNet is pleased to announce that we are now an officially recommended repository for the journal Scientific Data (SciData). SciData is an open-access, peer-reviewed publication from the Nature Publishing Group focusing on scientifically valuable research datasets. SciData's primary article-type, the Data Descriptor, is designed to make your data more discoverable, interpretable and reusable. Users who have contributed data to PhysioNet are now invited to submit their unpublished data as a Data Descriptor to Scientific Data! Pre-submission enquires are welcome at scientificdata@nature.com.

12 December 2014

NEW DATABASE ADDED: Combined measurement of ECG, Breathing, and Seismocardiograms Database (CEBSDB). A dataset of 60 records from 20 volunteers has been contributed to PhysioBank by Miguel Angel Garcia Gonzalez and Ariadna Argelagos Palou from the Universitat Politecnica de Catalunya. Each record contains two ECGs, a respiration, and a seismocardiogram signals. The database was designed to check if errors in RR series are influenced by breathing, and if there is a significant variability in RR series estimated from ECGs versus seismocardiograms.

3 November 2014

Two new software packages have been added to the PhysioTookit library. FECGSyn is a new Foetal ECG Waveform Generator contributed by Joachim Behar and colleagues in Gari Clifford's group at the University of Oxford. The second package, the Random Search Toolbox, is a MATLAB toolbox for selecting model hyper-parameters via random search, also contributed by Joachim Behar and colleagues in Gari Clifford's group.

4 April 2014

PhysioNet users with an interest in sleep physiology now have access to the web site of the National Sleep Research Resource (NSRR), which hosts large annotated collections of EDF polysomnograms and related clinical data elements from well-characterized research cohorts and clinical trials. The first data set available includes over 8,000 studies from exams 1 and 2 of the Sleep Heart Health Study, with scheduled new data releases every quarter from additional data sets. NSRR also provides open-source software for viewing and analyzing these data.

6 March 2014

The ECG-ID Database is a set of 310 ECGs from 90 volunteers, created and contributed to PhysioBank by Tatiana Lugovaya, who used the data in her master's thesis on the topic of biometric human identification using the ECG. An excellent summary of this thesis, with a discussion of the challenges in using ECGs as biometrics, and a comparison of the author's methods and results with those of three previous studies, is also available.

4 March 2014

A set of high-resolution multichannel EEG recordings — created and contributed by Luca Citi, Riccardo Poli, and Caterina Cinel — was generated as part of a study aimed at identifying the factors limiting the performance of brain-computer interfaces (BCIs) based on event-related potentials (ERPs), in order to improve the transfer rate and the usability of these interfaces. Twenty recordings of each of 10 participants include annotated 64-channel EEGs and 4-channel EOGs, generated while the participants focused on specified target characters displayed by a traditional matrix speller.

3 March 2014

A collection of motion artifact contaminated fNIRS and EEG data has been contributed to PhysioBank by Kevin Sweeney and colleagues at the National University of Ireland in Maynooth. The data set contains examples of functional near-infrared spectroscopy (fNIRS) and electroencephalogram (EEG) recordings that have been created for evaluating artifact removal methods. In each such recording, one or two pairs of similar physiological signals have been acquired from transducers in close proximity. One signal of each pair is contaminated by motion artifact, documented in each case by simultaneously recorded outputs of 3-axis accelerometers affixed to each transducer.

18 February 2014

The CTU-UHB Intrapartum Cardiotocography Database, from the Czech Technical University (CTU) in Prague and the University Hospital in Brno (UHB), contains 552 cardiotocography (CTG) recordings, which were carefully selected from 9164 recordings collected between 2010 and 2012 at UHB. The CTG recordings start no more than 90 minutes before actual delivery, and each is at most 90 minutes long. Each CTG contains a fetal heart rate (FHR) time series and a uterine contraction (UC) signal, each sampled at 4 Hz. Each CTG is accompanied by maternal, delivery, and fetal clinical details.

30 January 2014

A contribution of simulated fetal phonocardiograms is now available in PhysioBank. The synthetic PCGs exhibit a realistic range of signal-to-noise ratios, with simulated maternal heart and organ sounds, fetal movements, and environmental sounds.

7 January 2014

The 15th annual PhysioNet/CinC Challenge, Robust Detection of Heart Beats in Multimodal Data, is now underway. Read the first announcement, and study the training data set and a sample entry.

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