#!/bin/sh # file: plot2d G. Moody 16 May 1995 # Last revised: 5 May 1999 # # ----------------------------------------------------------------------------- # plot2d: Plot contents of stdin or a named file using 'gnuplot' in batch mode # Copyright (C) 1999 George B. Moody # # This program is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later # version. # # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program; if not, see . # # You may contact the author by e-mail (wfdb@physionet.org) or postal mail # (MIT Room E25-505A, Cambridge, MA 02139 USA). For updates to this software, # please visit PhysioNet (http://www.physionet.org/). # _____________________________________________________________________________ # # This shell script is a quick-and-dirty partial replacement for 'plt', which # is available from http://www.physionet.org/physiotools/plt. 'plot2d' accepts # a few of the most commonly-used `plt' options and produces similar plots. # # See `plot2d.1' (type `man plot2d') for usage and examples. # Initialize variables. CFILE=/tmp/gpcommands.$$ # gnuplot command file TFILE=/tmp/gpdata.$$ # gnuplot data file (used only for piped input) IFILE='-' # input file: '-' means use standard input FMTFILE='-' # file containing additional GNUPLOT format commands PRINTER='-' # printer name for lpr: '-' means don't print (plot on-screen) PIPED=no # if 'yes', input is arriving via a pipe TITLE='' # title for the top of the plot (may include spaces if quoted) XCOL='-1' # column number for abscissas: -1 means use row numbers XLABEL='' # label for x-axis (may include spaces if quoted) XMIN='' # minimum abscissa for data to be included in the plot XMAX='' # maximum abscissa for data to be included in the plot XTICK='' # x-axis tick interval (currently ignored) YCOL='-2' # column number for ordinates: -2 indicates YCOL not specified YLABEL='' # label for y-axis (may include spaces if quoted) YMIN='' # minimum ordinate for data to be included in the plot YMAX='' # maximum ordinate for data to be included in the plot YTICK='' # y-axis tick interval (currently ignored) # Read the argument list and interpret the arguments. while [ "x$1" != x ] do case $1 in -t) TITLE=$2; shift ;; -x) XLABEL=$2; shift ;; -y) YLABEL=$2; shift ;; -xa) XMIN=$2; shift; XMAX=$2; shift; XTICK=$2; shift ;; -ya) YMIN=$2; shift; YMAX=$2; shift; YTICK=$2; shift ;; -f) FMTFILE=$2; shift; ;; -T) PRINTER=$2; shift ;; -X) XMIN=$2; shift; XMAX=$2; shift ;; -Y) YMIN=$2; shift; YMAX=$2; shift ;; -1|0|1|2|3|4|5|6|7|8|9) case $YCOL in -2) YCOL=$1 ;; *) XCOL=$YCOL; YCOL=$1 ;; esac ;; -*) echo "usage: plot2d [IFILE] [ [ XCOL ] YCOL ] [ OPTIONS ...]" echo " IFILE is the input file. It should contain one or more space- or" echo " tab-separated columns per line, with each point on a line. Omit" echo " IFILE to read data from the standard input." echo " XCOL specifies the column number of the abscissas. The leftmost" echo " column is column 0. Omit XCOL to use row numbers as abscissas." echo " YCOL specifies the column number of the ordinates. If YCOL is" echo " omitted, plot2d plots column 1 vs. column 0." echo " OPTIONS include:" echo " -f FILE Include the contents of FILE as additional GNUPLOT" echo " formatting commands" echo " -h Print this help and exit (no plot is made)" echo " -t TITLE Use TITLE as the plot title" echo " -x LABEL Use LABEL as the X-axis label" echo " -y LABEL Use LABEL as the Y-axis label" echo " -X XMIN XMAX Plot abscissas between XMIN and XMAX only" echo " -Y YMIN YMAX Plot ordinates between YMIN and YMAX only" echo " -T PRINTER Plot on the specified PostScript PRINTER (default:" echo " plot on-screen; use '-T eps' to generate" echo " encapsulated PostScript on the standard output)" exit 1 ;; *) IFILE=$1 ;; esac shift done # Renumber the columns for gnuplot. Columns are numbered beginning with 1 by # gnuplot, and beginning with 0 by plot2d (as in 'plt'). There are three # possibilities, depending on how many of XCOL and YCOL were specified: # Specified Columns plotted # XCOL YCOL X Y # no no 1 2 # no yes 0 (*) YCOL+1 # yes yes XCOL+1 YCOL+1 # # (*) "Column 0" is the row number (line number) in gnuplot. To use the row # number as the ordinate, specify YCOL as -1 in the plot2d argument list. XCOL=`expr $XCOL + 1` case $YCOL in -2) XCOL=1; YCOL=2 ;; *) YCOL=`expr $YCOL + 1` ;; esac # If receiving input from a pipe, save it in a file for plotting. (This # program treats redirected standard input in the same way.) case $IFILE in -) IFILE=$TFILE; PIPED=yes; cat >$TFILE ;; esac # Generate the gnuplot command file. # # The first section is omitted unless a -T option has been specified. The # "-T eps" option produces encapsulated PostScript on the standard output; # use it to generate a figure to be included within another document, or to # be rendered at a later time. gnuplot's PostScript options follow the # "set terminal postscript ..." lines below. The commonly-used alternatives # to those used here are "portrait" (instead of "landscape"), "color" (instead # of "monochrome"), "Courier" or "Helvetica" (instead of "Times-Roman"), and # "10", "12", or "16" (instead of "14", the type size in points). See the # gnuplot manual for details if you wish to customize these options. case $PRINTER in -) cp /dev/null $CFILE ;; eps) cat >$CFILE <$CFILE <>$CFILE <>$CFILE ;; esac # For example, FMTFILE might contain the line # set xtics("10 AM" 0, "Noon" 100, "2 PM" 200, "4 PM" 300) # (omitting the initial '#'). This would replace the standard X-axis tick # labels with those specified in the strings ("10 AM" at X=0, "Noon at X=100, # etc.). See the GNUPLOT manual for details about this and other options. # Finally write the command that will produce the plot itself. cat >>$CFILE <>$CFILE < to dismiss the plot window: " ! ;; esac # Make the plot by executing the gnuplot command file. Standard input is # reattached to the user's keyboard so that the response to the prompt can # be read. gnuplot $CFILE