Next: Introduction Up: Books about PhysioToolkit

WFDB Applications Guide

Tenth Edition
(Revised for release 10.6.2)
8 March 2019



George B. Moody
Harvard-MIT Division of Health Sciences and Technology

Copyright ©1980-2014 George B. Moody

The most recent versions of the programs described in this guide may be freely downloaded from PhysioNet. For further information, write to:

George B. Moody
MIT Room E25-505A
Cambridge, MA 02139
USA

A PDF version of this guide is available. The latest version can be downloaded from PhysioNet.

Permission is granted to make and distribute verbatim copies of this guide provided that the copyright notice and this permission notice are preserved on all copies.

Permission is granted to copy and distribute modified versions of this guide under the conditions for verbatim copying, provided also that the entire resulting derived work is distributed under the terms of a permission notice identical to this one.

Permission is granted to copy and distribute translations of this guide into another language, under the above conditions for modified versions.

Contents

Applications

• a2m, ad2m, ahaconvert, ahaecg2mit, m2a, md2a: converting between AHA DB and WFDB formats
• ann2rr, rr2ann: convert annotation files to interval lists and vice versa
• bxb: ANSI/AAMI-standard beat-by-beat annotation comparator
• calsig: calibrate signals of a WFDB record
• coherence: estimate coherence and cross-spectrum of two time series
• dfa: detrended fluctuation analysis
• ecgeval: generate and run ECG analyzer evaluation script
• ecgpuwave: QRS detector and waveform limit locator
• edf2mit, mit2edf: convert between EDF and WFDB-compatible formats
• edr: derive a respiration signal from an ECG
• epicmp: ANSI/AAMI-standard episode-by-episode annotation comparator
• fft: fast Fourier transform
• fir: general-purpose FIR filter for WFDB records
• gqfuse: combine QRS annotation files
• gqrs, gqpost: QRS detector and post-processor
• hrfft, hrlomb, hrmem: calculate and plot heart rate power spectra
• hrstats: collect and summarize heart rate statistics from an annotation file
• ihr: calculate instantaneous heart rate
• imageplt: plot a greyscale image
• log10: calculate common logarithms of two-column data
• lomb: estimate power spectrum using the Lomb periodogram method
• lwcat: postprocess output of plt to make PostScript, EPS, PDF or PNG
• memse: estimate power spectrum using maximum entropy (all poles) method
• mfilt: general-purpose median filter for WFDB records
• mrgann: merge annotation files
• mxm: ANSI/AAMI-standard measurement-by-measurement annotation comparator
• nguess: guess the times of missing normal beats in an annotation file
• nst: noise stress test for ECG analysis programs
• parsescp: parse SCP-ECG, optionally save in PhysioBank-compatible format
• plot2d, plot3d: make 2-D or 3-D plots from text files of data, using gnuplot
• plotstm: produce scatter plot of ST measurement errors on a PostScript device
• plt: make 2-D plots
• pltf: make function plots
• pnnlist, pNNx: derive pNNx statistics from an annotation interval list or an annotation file
• pnwlogin: provide direct access to PhysioNetWorks for WFDB applications
• pschart: produce annotated `chart recordings' on a PostScript device
• psfd: produce annotated `full-disclosure' plots on a PostScript device
• rdann: read a WFDB annotation file
• rdedfann: extract annotations from an EDF+ file
• rdsamp: read WFDB signal files
• rxr: ANSI/AAMI-standard run-by-run annotation comparator
• sampfreq: show sampling frequency for a record
• setwfdb, cshsetwfdb: set WFDB environment variables
• sigamp: measure signal amplitudes of a WFDB record
• sigavg: calculate averages of annotated waveforms
• signame: print names of signals of a WFDB record
• signum: print signal numbers of a WFDB record having specified names
• skewedit: edit skew fields of header file(s)
• snip: copy an excerpt of a WFDB record
• sortann: rearrange annotations in canonical order
• sqrs, sqrs125: single-channel QRS detector
• stepdet: single-channel step change detector
• sumann: summarize the contents of a WFDB annotation file
• sumstats: derive aggregate statistics from bxb, rxr, etc., line-format output
• tach: heart rate tachometer
• time2sec: convert WFDB standard time format into seconds
• wabp: arterial blood pressure (ABP) pulse detector
• wav2mit, mit2wav: convert between .wav and WFDB-compatible formats
• wave: waveform analyzer, viewer, and editor
• wfdb-config: print WFDB library version and configuration info
• wfdb2mat: convert WFDB-compatible signal file to Matlab .mat file
• wfdbcat: copy WFDB files to standard output
• wfdbcollate: collate WFDB records into a multi-segment record
• wfdbdesc: read signal specifications
• wfdbmap: make a synoptic map of a WFDB record
• wfdbtime: convert time to sample number, elapsed, and absolute time
• wfdbwhich: find a WFDB file and print its pathname
• wqrs: single-channel QRS detector based on length transform
• wrann: write a WFDB annotation file
• wrsamp: write WFDB signal files
• xform: sampling frequency, amplitude, and format conversion for WFDB records

WFDB libraries

• wfdb: Waveform Database library
• wfdbf: Waveform Database library wrappers for Fortran

WFDB file formats

• annot: WFDB annotation file formats
• header: WFDB header file format
• signal: WFDB signal file formats
• wfdbcal: WFDB calibration file format

Miscellaneous

• xview: xview toolkit information

Appendices

• Installing the WFDB Software Package
• Evaluating ECG Analyzers

Other links of interest

• PhysioNet
  PhysioNet offers free access via the web to large collections of recorded physiologic signals and related open-source software. The PhysioNet web site is a public service of the PhysioNet Resource funded by the National Institutes of Health's NIBIB and NIGMS. The most recent version of this guide, and of the software it describes, may be obtained from PhysioNet.
• WFDB Programmer's Guide
  Includes tutorial and reference material relating to the WFDB library, a portable set of functions (subroutines) for reading and writing files in the formats supported by the applications described here. The WFDB library may be used with C, C++, or Fortran programs; the guide primarily describes the C interface.
• WAVE User's Guide
  A comprehensive tutorial, with extensive reference material, for WAVE, an interactive waveform browser with facilities for annotation editing and control of external analysis programs. WAVE runs on PCs under the free GNU/Linux and FreeBSD operating systems, and under MS-Windows with Cygwin/X, as well as on Mac OS X and on SPARC-based systems under SunOS or Solaris.